RefCirc
a reference database for circRNAs validated by experiments
| ARP_circRNA Details |
| Basic Information |
| circRNA | ARP_circRNA |
| Alias | - |
| circBase ID | - |
| Host gene | ARP |
| Species | plasmodium falciparum |
| Peptide | - |
| Sequence | AGAATTATTAGAGAAAAGGCGTTTAATATTAAAGTCCTATGACACCTGAAGCTCATGCAAGATGTAGAAAAAATTTTAAAAAAATTAAAATAATATAATATTGAAAATGTTGTATTTATTTATGCCAATATATAATTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAGTGTTAGGATTGCAATAGTTAAAGAAGAACAGGCTAGAAAGATAGAAGATATTATTATAAGA |
| Expression |
| Description | Our results confirmed the non-canonical ARP_circRNA splice junction in cDNA preparations from either biological replicate time course. Sequence confirmation for the ARP_circRNA divergent amplicon is shown, where the GTAG splice donor-acceptor tag is included in the predicted sequence as a marker for the circRNA splice junction. |
| Method | PCR, sanger sequencing |
| Sample | plasmodium |
| Reference |
| Pubmed ID | 26070627 |
| Trait/Disease | Malaria |
| Title | Strand-specific RNA sequencing in Plasmodium falciparum malaria identifies developmentally regulated long non-coding RNA and circular RNA. |
| Authors | Broadbent KM, Broadbent JC, Ribacke U, Wirth D, Rinn JL, Sabeti PC. |
| Journal | BMC Genomics. 2015 |