RefCirc
a reference database for circRNAs validated by experiments
| circRNA PUM1 Details |
| Basic Information |
| circRNA | circRNA PUM1 |
| Alias | hsa_circ_001967 |
| circBase ID | hsa_circ_0000043 |
| Host gene | PUM1 |
| Species | homo sapiens |
| Peptide | - |
| Sequence | GGCCCAAGGGATGCAGACAGTGATGAAAACGACAAAGGTGAAAAGAAGAACAAGGGTACGTTTGATGGAGATAAGCTAGGAGATTTGAAGGAGGAGGGTGATGTGATGGACAAGACCAATGGTTTACCAGTGCAGAATGGGATTGATGCAGACGTCAAAGATTTTAGCCGTACCCCTGGTAATTGCCAGAACTCTGCTAATGAAGTGGATCTTCTGGGTCCAAACCAGAATGGTTCTGAGGGCTTAGCCCAGCTGACCAGCACCAATGGTGCCAAGCCTGTGGAGGATTTCTCCAACATGGAGTCCCAGAGTGTCCCCTTGGACCCCATGGAACATGTGGGCATGGAGCCTCTTCAGTTTGATTATTCAGGCACGCAGGTACCTGTGGACTCAGCAGCAGCAACTGTGGGACTTTTTGACTACAATTCTCAACAACAG |
| Expression |
| Description | This circRNA with top H score and high/medium expression of the host transcript was (1) resistant to RNase R and (2) had the predicted head-to-tail junctions, as validated by Sanger sequencing, suggesting that the circRNA exists in circularized form in HEK293 cells. |
| Method | qRT-PCR, sanger sequencing |
| Sample | HEK293 cells |
| Reference |
| Pubmed ID | 25558066 |
| Trait/Disease | - |
| Title | Analysis of intron sequences reveals hallmarks of circular RNA biogenesis in animals. |
| Authors | Ivanov A, Memczak S, Wyler E, Torti F, Porath HT, Orejuela MR, Piechotta M, Levanon EY, Landthaler M, Dieterich C, Rajewsky N. |
| Journal | Cell Rep. 2015 |